Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
2GOX Chain:B ((101-165))
----------------------------------------------------------------------------------------------------TDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
General information:
TITO was launched using:
RESULT:
Template:
2GOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2224 for 408 contacts (-5.5/contact) +
2D Compatibility (PS) -7163 + (NN) -4565 + (LL) 5172
1D Compatibility (HY) -8400 + (ID) 3250
Total energy: -20430.0 ( -50.07 by residue)
QMean score : 0.694
(partial model without unconserved sides chains):
PDB file :
Tito_2GOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GOX-query.scw
PDB file :
Tito_Scwrl_2GOX.pdb
: