Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
4H8E Chain:A ((19-253))
------------------LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGL---
General information:
TITO was launched using:
RESULT:
Template:
4H8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109833 for 1836 contacts (-59.8/contact) +
2D Compatibility (PS) -25017 + (NN) -7734 + (LL) 1312
1D Compatibility (HY) -34000 + (ID) 11750
Total energy: -187022.0 ( -101.86 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_4H8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H8E-query.scw
PDB file :
Tito_Scwrl_4H8E.pdb
: