Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
3W8R Chain:A ((8-196))
-----VIGIAGGTASGKTTLAQALARTL-GERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAHTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEM------------
General information:
TITO was launched using:
RESULT:
Template:
3W8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62767 for 1476 contacts (-42.5/contact) +
2D Compatibility (PS) -20268 + (NN) -7833 + (LL) 1820
1D Compatibility (HY) -19600 + (ID) 5050
Total energy: -113698.0 ( -77.03 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_3W8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W8R-query.scw
PDB file :
Tito_Scwrl_3W8R.pdb
: