Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGSKGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQEYLKQGYNVIMDIPLLFENELENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED
1VHL Chain:A ((6-191))
---IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQ--QETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARL----------------
General information:
TITO was launched using:
RESULT:
Template:
1VHL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43516 for 1363 contacts (-31.9/contact) +
2D Compatibility (PS) -20413 + (NN) -6919 + (LL) 872
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -83576.0 ( -61.32 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_1VHL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHL-query.scw
PDB file :
Tito_Scwrl_1VHL.pdb
: