Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITFENIQQLEKYTLMTMHGLFNQLKLGIISIDNAEHTLFTPYMMESLSSLGVKPDIIDLIHKGTELEDFAAFNLSIEDTVTVCLQRTEELLNQYKNVEFNDKILINWRIIQE
2VF2 Chain:A ((107-130))
--------QFNRYAAMALKGLFDQLGLGRVPL---------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9515 for 88 contacts (-108.1/contact) +
2D Compatibility (PS) -2414 + (NN) -668 + (LL) 7356
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -8941.0 ( -101.60 by residue)
QMean score : 0.024
(partial model without unconserved sides chains):
PDB file :
Tito_2VF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VF2-query.scw
PDB file :
Tito_Scwrl_2VF2.pdb
: