Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
4GVP Chain:A ((1-208))
-TIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
General information:
TITO was launched using:
RESULT:
Template:
4GVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114480 for 1695 contacts (-67.5/contact) +
2D Compatibility (PS) -22167 + (NN) -7693 + (LL) 208
1D Compatibility (HY) -30400 + (ID) 10400
Total energy: -184932.0 ( -109.10 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_4GVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GVP-query.scw
PDB file :
Tito_Scwrl_4GVP.pdb
: