Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNAIELSNVNYSSDQFNLKNISFKVPQGFVTGFIGRNGAGKTTIIRLIMDLYQPQTGVIRVLEEDMALNPIELKNSIGFVYSENYFNERWTTKQLEKMIAPFYRKWDHQVFEFYLEKFDLP-----INKSIKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLEIIQQELIDENKTIFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQRYQVVSGATEDLDDELASLLIYEEHKRTGFIGLTEHAQVFKEILGHKVNITTPSIENLMVYLEKRKPKYHENIKLMEEGF
1VPL Chain:A ((31-238))-----------------LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS-QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK-----------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1VPL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108282 for 1589 contacts (-68.1/contact) +
2D Compatibility (PS) -22386 + (NN) -10650 + (LL) 7040
1D Compatibility (HY) -14400 + (ID) 3350
Total energy: -152028.0 ( -95.68 by residue)
QMean score : 0.552

(partial model without unconserved sides chains):
PDB file : Tito_1VPL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VPL-query.scw
PDB file : Tito_Scwrl_1VPL.pdb: