Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRSLLFLTVLLLLFSFSSITNEVSASSSFDKGKYKKGDDASYFEPTGPYLMVNVTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVVPDLSEHIKNPGFNLITKVVIEKK
1SSN Chain:A ((2-136))
----------------------------SSFDKGKYKKGDDASYFEPTGPYLMVNVTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVVPDLSEHIKNPGFNLITKVVIEKK
General information:
TITO was launched using:
RESULT:
Template:
1SSN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17285 for 963 contacts (-17.9/contact) +
2D Compatibility (PS) -14716 + (NN) -7926 + (LL) 2868
1D Compatibility (HY) -18000 + (ID) 6750
Total energy: -61809.0 ( -64.18 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1SSN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSN-query.scw
PDB file :
Tito_Scwrl_1SSN.pdb
: