Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
1JWM Chain:D ((1-239))
---------------------------ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSK-------GGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
General information:
TITO was launched using:
RESULT:
Template:
1JWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43132 for 1816 contacts (-23.8/contact) +
2D Compatibility (PS) -25655 + (NN) -12745 + (LL) 3540
1D Compatibility (HY) -31600 + (ID) 11600
Total energy: -121192.0 ( -66.74 by residue)
QMean score : 0.686
(partial model without unconserved sides chains):
PDB file :
Tito_1JWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JWM-query.scw
PDB file :
Tito_Scwrl_1JWM.pdb
: