Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLL-FVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVIDRT----LKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAA--GLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
1YC5 Chain:A ((9-242))
----------LLNESRLTVTLTGAGISTPSGIPDF-----------QN------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
1YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116376 for 1806 contacts (-64.4/contact) +
2D Compatibility (PS) -22609 + (NN) -2491 + (LL) 1248
1D Compatibility (HY) -22000 + (ID) 4550
Total energy: -166778.0 ( -92.35 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YC5-query.scw
PDB file :
Tito_Scwrl_1YC5.pdb
: