Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSKRLEIVSTIVKKHKIYKKEQIISYIEEYFGVRYSATTIAKDLKELNIYRVPIDCETWIYKAINNQTEQEMREKFRHYCEHEVLSSIINGSYIIV-KTSPGFAQGINYFIDQLNIEEILGTVSGNDTTLILTASNDMAEYVYAKLFK
1F9N Chain:A ((3-147))
--KGQRHIKIREIITSNEIETQDELVDMLKQD-GYKVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQRFNPLSKLKRALMDAFV--KIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLE
General information:
TITO was launched using:
RESULT:
Template:
1F9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65412 for 966 contacts (-67.7/contact) +
2D Compatibility (PS) -15684 + (NN) -6338 + (LL) 552
1D Compatibility (HY) -9600 + (ID) 2000
Total energy: -98482.0 ( -101.95 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1F9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9N-query.scw
PDB file :
Tito_Scwrl_1F9N.pdb
: