Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQYAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQD---IQRLASLNVHAAIIGKAAHQASFWEGLE
4WD0 Chain:A ((11-238))
VLELLPAVDIVDGQAVRLL------ETSYGTPLEAALNW--QNDGAEWVHMVDLDAAFG--NNAALISDVVSQLNVK-VELSGGLRDDESLERALELGVARVNLGTAALENPEWTRKAIDRFGDKIAVGLDVRGTTLAGRGWTKEGG-DLWEVLARLEDAGCARYVVTDVTKD----GPNVELLRQMVEKTGKPVVASGGISSLEDLRVLRELVPLGVEGAIVGKALYAGAF-----
General information:
TITO was launched using:
RESULT:
Template:
4WD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128004 for 1735 contacts (-73.8/contact) +
2D Compatibility (PS) -22724 + (NN) -4362 + (LL) 800
1D Compatibility (HY) -16800 + (ID) 3200
Total energy: -174290.0 ( -100.46 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_4WD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WD0-query.scw
PDB file :
Tito_Scwrl_4WD0.pdb
: