Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
1XSD Chain:A ((2-126))
-TNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
General information:
TITO was launched using:
RESULT:
Template:
1XSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51955 for 756 contacts (-68.7/contact) +
2D Compatibility (PS) -13565 + (NN) -7596 + (LL) 208
1D Compatibility (HY) -18400 + (ID) 6250
Total energy: -97558.0 ( -129.04 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1XSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XSD-query.scw
PDB file :
Tito_Scwrl_1XSD.pdb
: