Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANWFMGVF
3UFX Chain:B ((290-313))
---------------------------YNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKLLEGK
General information:
TITO was launched using:
RESULT:
Template:
3UFX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4479 for 73 contacts (-61.4/contact) +
2D Compatibility (PS) -2795 + (NN) -2401 + (LL) 2488
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -10187.0 ( -139.55 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3UFX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UFX-query.scw
PDB file :
Tito_Scwrl_3UFX.pdb
: