Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKVLYALMGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMATLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKNYYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCLWACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKV-VDGYDNPVNTRIVGD---YIIAEDVSTKWTLRLGKDYLCIRFVKRRKGE |
3JQO Chain:B ((5-106)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKRITQKLKQTAFAGAKNYQYVMSEQPEMRSIQPVHVWDNYRFTRFEFP---ANAELPQVYMISASGKETLPNSHVVGENRNIIEVETVAKEWRIRLGDKVVGVRNNNFAPGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JQO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -33767 for 600 contacts (-56.3/contact) +
2D Compatibility (PS) -10266 + (NN) 2529 + (LL) 15036
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: -32618.0 ( -54.36 by residue)
QMean score : 0.239
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