Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRYFLVVFLFLFVGCMKKDFTLKDLSLPQEASSYLASSQNSSHNNQSIDPQALRENLKESYLKAWYSPWLDAKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDELIKNMDIERYPSTKIKAVVVRNNDVRAVPTNKPYYLSP----KGYPFDRFQNSLVFPGTPVLITPFNPDKTYPPLQSSFVYGWIKVSELAYMRDKEIELLTKLKNYDMP--IKEKNPLYTDYGEFYPHAKIGELFPLIPQIQNASQIPPKKELKAYGFLKDAKGYAALQSVFLDEKDFFVFPKAFTSEIMAYFINTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIIKNATPFGTLIYLKGHIMLYLGERNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKDFVHKTSSPLNAN |
3M1U Chain:A ((59-403)) | -----------------------------------------------------------------FAPWRMTRISVPVKDVAAPFGTDGRPRGYAENLLPWDVTRWGALASGAALDLYPSQAWKGIVVSNSALREVPTLRPMFTAPTRAGQGYPFDMFQRTAVWMGTPVFVGHATADRAWLYVETAFAAGWMPAADVARVDDA---FMTRYESGSLAAILRDDTSLNGADGTHLATAHIGTVLPL----S-----GRTVLVP----VRAPEGHAVVVPVLLTSGEAAQKPVPLTPGNMAELGNRMMGQPYGWGGLYEDRDCSSTLRDLFTPFGLWLPRNSASQAK-AGRYVDIAKLDADDKEARIVAEGVPFMTLLWLRGHITLYLGLHEGQAAMFHNMWGIRTHRGGVEGRYVLGRAVVTSTRPGLDVPGNDNADGLLGRMQGMSILPG------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M1U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66126 for 2586 contacts (-25.6/contact) +
2D Compatibility (PS) -35568 + (NN) -8399 + (LL) 7248
1D Compatibility (HY) -20800 + (ID) 5550
Total energy: -129195.0 ( -49.96 by residue)
QMean score : 0.406
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