Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSMYYAFRDRKQKKREFRSLWVVRINAACRMHNTSYSRFMHALKVANIELDRKVLADMAMNDMQAFKSVLESVKEHL
3J3V Chain:Q ((3-117))
-RVKGGTVTRKRRKKVLKLAKGYFGSKHTLYKVANQQVMKSGNYAFRDRRQKKRDFRKLWITRINAAARMNGLSYSRLMHGLKLSGIEVNRKMLADLAVNDLTAFNQLADAAKAQL
General information:
TITO was launched using:
RESULT:
Template:
3J3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3170 for 672 contacts (-4.7/contact) +
2D Compatibility (PS) -12367 + (NN) -5050 + (LL) 208
1D Compatibility (HY) -10000 + (ID) 3050
Total energy: -33429.0 ( -49.75 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3J3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J3V-query.scw
PDB file :
Tito_Scwrl_3J3V.pdb
: