Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGVSPDNSQSHQKFISQCSLNVILLCDEDKKVANLYKAYGKRMLYGKEHLGIIRSTFIINTQGVLEKCFYNVKAKGHAQKVLESL
3GKK Chain:A ((9-157))
---LELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGCTTEGLDFNALLPEFDKAGAKILGVSRDSVK---NFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAAL
General information:
TITO was launched using:
RESULT:
Template:
3GKK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94588 for 1072 contacts (-88.2/contact) +
2D Compatibility (PS) -15673 + (NN) -2918 + (LL) 512
1D Compatibility (HY) -10000 + (ID) 2750
Total energy: -125417.0 ( -116.99 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3GKK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKK-query.scw
PDB file :
Tito_Scwrl_3GKK.pdb
: