Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLESLRGFAYAFFTILFTLFLYAYIFSMYRKQKKGIVDYERYGYLALNDALEDELIEPRHKEVHDKGIKES
2RDD Chain:B ((19-28))
---------------------------MILRPQQKRTKEHKKLMDS--------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2283 for 31 contacts (73.6/contact) +
2D Compatibility (PS) -1155 + (NN) -981 + (LL) 4900
1D Compatibility (HY) -400 + (ID) 150
Total energy: 4497.0 ( 145.06 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2RDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDD-query.scw
PDB file :
Tito_Scwrl_2RDD.pdb
: