Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYITSLGHKDERKDPSKP
1XWW Chain:A ((39-123))
-----------WVIDSGA-----VSDWNVGRS--PDPRAVSCLRNHGIHTAHK---------------ARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIE
General information:
TITO was launched using:
RESULT:
Template:
1XWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10262 for 482 contacts (-21.3/contact) +
2D Compatibility (PS) -8358 + (NN) 4094 + (LL) 3872
1D Compatibility (HY) -4000 + (ID) 1350
Total energy: -16004.0 ( -33.20 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1XWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XWW-query.scw
PDB file :
Tito_Scwrl_1XWW.pdb
: