Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHN--HYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL
1S4Q Chain:A ((24-201))
-----RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG----------------------
General information:
TITO was launched using:
RESULT:
Template:
1S4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72041 for 1266 contacts (-56.9/contact) +
2D Compatibility (PS) -19519 + (NN) -9584 + (LL) 2220
1D Compatibility (HY) -12800 + (ID) 3550
Total energy: -115274.0 ( -91.05 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_1S4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S4Q-query.scw
PDB file :
Tito_Scwrl_1S4Q.pdb
: