Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPNNPNNPINNQK
1J2Y Chain:A ((1-156))
MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNN------------
General information:
TITO was launched using:
RESULT:
Template:
1J2Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119962 for 1225 contacts (-97.9/contact) +
2D Compatibility (PS) -17521 + (NN) -8089 + (LL) -856
1D Compatibility (HY) -24400 + (ID) 7800
Total energy: -178628.0 ( -145.82 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1J2Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J2Y-query.scw
PDB file :
Tito_Scwrl_1J2Y.pdb
: