Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVSLIVALVFCCFLGAVELPGVYQTQEFLYMKSSFVEFFEHNGKFYAYGISDVDGSKAKKDKLNPNPKLRNRSDKGVVFLSDLIKVGEQSYKGGKAYNFYDGKTYHVRVTQNSNGDLEFTSSYDKWGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVLKTLKDSPI
4INN Chain:A ((33-178))
-----------------TVELPGIYQTQEFLYMKSSFVEFFEHNGKFYAYGISDVDGSKAKKDKLNPNPKLRNRSDKGVVFLSDLIKVGKRSYKGGKAYNFYDGKTYYVRVAQNSNGDLEFTSSYDKWGYMGKTFTWKRLSDEEIKNLKLKRFNLDEVLKTIK----
General information:
TITO was launched using:
RESULT:
Template:
4INN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18563 for 1031 contacts (-18.0/contact) +
2D Compatibility (PS) -15480 + (NN) -3399 + (LL) 2036
1D Compatibility (HY) -20000 + (ID) 6900
Total energy: -62306.0 ( -60.43 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_4INN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4INN-query.scw
PDB file :
Tito_Scwrl_4INN.pdb
: