Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGSNHMKNKTLVISGATRGIGKAILYRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYPLNVLEPEQYTELFKQVDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGGTTFK
3OIC Chain:A ((3-248))
-------QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE-KLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNA------ASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAI-------FPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVS-SKADMIRGQTIIVDGGRSLL
General information:
TITO was launched using:
RESULT:
Template:
3OIC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122840 for 2013 contacts (-61.0/contact) +
2D Compatibility (PS) -26115 + (NN) -9530 + (LL) 1152
1D Compatibility (HY) -16000 + (ID) 4600
Total energy: -177933.0 ( -88.39 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_3OIC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OIC-query.scw
PDB file :
Tito_Scwrl_3OIC.pdb
: