Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVFFHKKIILNFIYSLMVAFLFHLSYGVLLKADGMAKKQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDYFLDFIPIVFTRKERTLLLSLQTSPYQDIVKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRLHQYYLFSHSNGRYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVKRPHYGVDYAAKHGSLIHSASDGRVGFIGVKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQYSKQKLEELFKTHSFEKNSFYLLEGF |
4RNY Chain:A ((2-363)) | --------------------------------------------ERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNTLIQALIPISQDLQIHIYKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIIKATNDPLLANQLMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVSSRSNQYYLFSHSNGHYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVG----STGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQRSKQKLEELLKTHSFEKNSFYLLEGF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RNY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190401 for 2798 contacts (-68.0/contact) +
2D Compatibility (PS) -38486 + (NN) -14407 + (LL) 4568
1D Compatibility (HY) -50800 + (ID) 17400
Total energy: -306926.0 ( -109.69 by residue)
QMean score : 0.551
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