Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLEKQHIQYFKNLVGGEDFFTDLAHLNAYCYDATKERHLPSG----VIFPKNEREISQILKYCNEHRLIVVPRGAGSGFTGGALSVSGGLVLSVEKHLDKILEIDTKNLIARVEPGVINKHFQNEVEKLDLFYPPDPASENQSTLGGNVAENAGGMRAAKYGITKDYVMALRVVLANGEIIRAGKKTIKDVAGFNIAGLMIASEGCLGVISEITLKLLAKPPLKQSAMGVFNHIEDAMN--AVYKTMSSG---------VTPVAMEFLDNLSIKAVEERFSKGLPKDAGAILITQVDGVVKEQIAWQLNEIEKHFKANGCVGFKIAQNEQEEQDLWFSRRNASQSISVYGKKKLNEDVTVPRASLPSLLQE--VAKISQKYGFKIPCFGHTGDGNVHVNI---MLEDPKRDLEKGHKAMEEIFQAAISLEGTLSGEHGIGLSKAKFMPLAFNHSEMELFRNIKKALDPNNILNPFKMGL |
| 3PM9 Chain:A ((13-475)) | -LSPELIARFTAIVGDKHALTDPLELEAYI---TEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISL-KRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPW--------YVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEG-GSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PM9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152271 for 3731 contacts (-40.8/contact) +
2D Compatibility (PS) -47493 + (NN) -13379 + (LL) 332
1D Compatibility (HY) -22000 + (ID) 7100
Total energy: -241911.0 ( -64.84 by residue)
QMean score : 0.369
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