Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPLNTAQVFIGSDHAGLHLAEFVKHFLED---KRFKIQAFLPTTRVDYPDYAKLVCQKVLENAQSYGILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGVAESILEAFFSTEFEQGRHVLRIQKLDESLKS
4EM8 Chain:A ((4-143))
--------RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDT--SFGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTAQSVLYTFMTTAFLGGRHAVRVQKLGE----
General information:
TITO was launched using:
RESULT:
Template:
4EM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115872 for 1121 contacts (-103.4/contact) +
2D Compatibility (PS) -14859 + (NN) -7838 + (LL) 792
1D Compatibility (HY) -13600 + (ID) 3250
Total energy: -154627.0 ( -137.94 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_4EM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EM8-query.scw
PDB file :
Tito_Scwrl_4EM8.pdb
: