Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKILKRPCHITLYSDSQYVCQAINVWLVNWQKKNF-----AKVKNVDLWKEFVKVSKGHSIVAVWIKGHNGHAENERCNSLAKLEAQKRVKTTT
1RBR Chain:A ((2-141))
LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEPCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDT
General information:
TITO was launched using:
RESULT:
Template:
1RBR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48265 for 1066 contacts (-45.3/contact) +
2D Compatibility (PS) -14732 + (NN) -8713 + (LL) 0
1D Compatibility (HY) -8400 + (ID) 3750
Total energy: -83860.0 ( -78.67 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1RBR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBR-query.scw
PDB file :
Tito_Scwrl_1RBR.pdb
: