Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQAKIKNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIRSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
4A7W Chain:A ((6-240))
-----KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNII---------IIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
General information:
TITO was launched using:
RESULT:
Template:
4A7W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169169 for 1882 contacts (-89.9/contact) +
2D Compatibility (PS) -24760 + (NN) -10413 + (LL) 896
1D Compatibility (HY) -34000 + (ID) 11250
Total energy: -248696.0 ( -132.14 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_4A7W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A7W-query.scw
PDB file :
Tito_Scwrl_4A7W.pdb
: