Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQL--KIKSHLHHNDQELKEKLVIKDHAIGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMREIGNLSILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHASMPSYAYMYALPYELYEKYQIRRYGFHGTSHHYVAKEAAKFLNIPYEEFNAISLHLGNGSSAAAIQNGKSVDTSMGLTPLEGLIMGTRCGDIDPTVVEYIAQCANKSLEEVMKILNHESGLKGICG--DNDARNIEVRKEKGDKQAKLAFEMCVYRIKKYIGAYMVVLKKVDAIIFTGGLGENYSALRESVCEGLENLGIALHKPTNDNP--GSALVNLSQPNTKIQILRIPTDEELEIALQAKEMVEKIKVV |
2IIR Chain:A ((1-400)) | MRVLVINSGSSSIKYQLIEMEGEKVLCKGIAERIGIEGSRLVHRVGDEKHVIERELP------DHEEALKLILNTLVDEKLGVIKDLKEIDAVGHRVVHGGERFKESVLVDEEVLKAIEEVSPLAPLHNPANLMGIKAAMKLLPGVPNVAVFDTAFHQTIPQKAYLYAIPYEYYEKYKIRRYGFHGTSHRYVSKRAAEILGKKLEELKIITCHIGNGASVAAVKYGKCVDTSMGFTPLEGLVMGTRSGDLDPAIPFFIMEKEGISPQEMYDILNKKSGVYGLSKGFSSDMRDIEEAALKGDEWCKLVLEIYDYRIAKYIGAYAAAMNGVDAIVFTAGVGENSPITREDVCSYLEFLGVKLDKQKNEETIRGKEGI-ISTPDSRVKVLVVPTNEELMIARDTKEIVEK---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IIR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235544 for 3355 contacts (-70.2/contact) +
2D Compatibility (PS) -41917 + (NN) -15261 + (LL) 1376
1D Compatibility (HY) -36800 + (ID) 10100
Total energy: -338246.0 ( -100.82 by residue)
QMean score : 0.550
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