Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MISKFLLKSMFKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDIEGSMDEVMHSLYLQTNYEHLHKHDSAKAVQKPLKESSNISKHYDLGNDFYSIWLDETLSYSCAYFKKDDDTLHAAQLQKLDHTLKKLHLKQGEKLLDIGCGWGYLSIKAAQEYGAEVMGITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPFYFKKVKEVLKRGGMFLLHSILCCFEGKTNA--------------WVDKYIFPGGYLPSLREVMSVMSECDFHLLMAESLRIHYAKTLDIWRDNFNHNLDQVKRLGYDERFIRMWDLYLRTCASAFRVGSADLFQLLLTNSVDNTFPLTKEYIYQ |
| 1KPG Chain:A ((10-283)) | ----------------------------------------------------------------------------------------------------------ANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV---DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVYER-YMKYLTGCAEMFRIGYIDVNQFTCQK--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1KPG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -159626 for 2160 contacts (-73.9/contact) +
2D Compatibility (PS) -27603 + (NN) -2789 + (LL) 8760
1D Compatibility (HY) -19600 + (ID) 4850
Total energy: -205708.0 ( -95.24 by residue)
QMean score : 0.448
|
|
|