Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAIL-SREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
5C4I Chain:B ((247-303))
-------------------------------------------GNWRIQRPIIDREACTECYTCWIYCPDSCITRTEEGPVFNMKY--CKGCGLCTAVCPSGALTNVPELDFKD-----------------
General information:
TITO was launched using:
RESULT:
Template:
5C4I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17198 for 326 contacts (-52.8/contact) +
2D Compatibility (PS) -5789 + (NN) -2122 + (LL) 4652
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -28457.0 ( -87.29 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_5C4I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C4I-query.scw
PDB file :
Tito_Scwrl_5C4I.pdb
: