Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYASKLALKICLVGLCLFSTLGAEHLEQKGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYMQKACDFDIDKNCKKKNTSSR
4BWR Chain:A ((27-215))
----------------------------------FQGNE--TTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRG---LGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILE
General information:
TITO was launched using:
RESULT:
Template:
4BWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71743 for 1534 contacts (-46.8/contact) +
2D Compatibility (PS) -20934 + (NN) -13513 + (LL) 2892
1D Compatibility (HY) -10000 + (ID) 3400
Total energy: -116698.0 ( -76.07 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_4BWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BWR-query.scw
PDB file :
Tito_Scwrl_4BWR.pdb
: