Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNHTSSFGSFIAKNGFLNEKEVAQKFNDYIHDRDAQIWLMIMGYDLNKIEYVKANVLSGYKADVNVIIQIKMKQTLDSENLQVKLVSNLKGFNQIDKRKLRSYQEMWNIPPNIYQLFAYFTGELKPTRQDIKYPNKRMLAYEFTNKEQQELLAWLNDNKMLIVSDILKGRGEFSAEWVLVIQKINLNMKWALKNINEVMQHYLDDGIVEISKKGSLKIGRITIQRKGGDNGRESANMLQFKIDPTGLLG
1YNM Chain:A ((7-245))
--------GSKTAKDGFKNEKDIADRFENWKENSEAQDWLVTMGHNLDEIKSVKAVVLSGYKSDINVQVLVFYKDALDIHNIQVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPPYHSNTK-DKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDILRGRGDFAAEWVLVAQKVSNNARWILRNINEVLQHY-GSGDISLSPRGSINFGRVTIQRKGGDNGRETANMLQFKIDPTELFD
General information:
TITO was launched using:
RESULT:
Template:
1YNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83722 for 1859 contacts (-45.0/contact) +
2D Compatibility (PS) -26349 + (NN) -10090 + (LL) 488
1D Compatibility (HY) -22800 + (ID) 6500
Total energy: -148973.0 ( -80.14 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1YNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YNM-query.scw
PDB file :
Tito_Scwrl_1YNM.pdb
: