Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNLAEAIKLHKLNQVLAHVSLKVKKEVVLEILEKITPTKACSILKPVMEVVLKNNRLDMLELVAEELSFDSKRTLEATLLVPQKLENNELEEVQQKLQARFNAPVEIAQDTWSKKGVSLSVSSLDLEIGFSKEDILKKIEKQVIQSI
1W3W Chain:A ((41-119))
---------------------------------------------------------EQAIIDVLTKRSNTQRQQIAKSFKAQFGK----DLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQADTSGYLERIL
General information:
TITO was launched using:
RESULT:
Template:
1W3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24654 for 439 contacts (-56.2/contact) +
2D Compatibility (PS) -8311 + (NN) -2104 + (LL) 5752
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -32317.0 ( -73.62 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1W3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W3W-query.scw
PDB file :
Tito_Scwrl_1W3W.pdb
: