Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVALGVLAFANVLMATDVKALVKGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGA---NKNPVMTAQAKKLSDEDIKALAKYIPTLK
1DVH Chain:A ((2-79))
--------------------DGAALYKSCIGCHGADGSKAAMGSAKPVKGQGAEELYKKMKGYADGSYGGERKAMMTNAVKKYSDEELKALADYMSKL-
General information:
TITO was launched using:
RESULT:
Template:
1DVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29111 for 536 contacts (-54.3/contact) +
2D Compatibility (PS) -7893 + (NN) -559 + (LL) 2616
1D Compatibility (HY) -4000 + (ID) 1400
Total energy: -40347.0 ( -75.27 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1DVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVH-query.scw
PDB file :
Tito_Scwrl_1DVH.pdb
: