Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSIRRGDGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKP----TNLEALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ
2PFU Chain:A ((45-127))
-------------------------------------VKVNLPASTST--PQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALT-EGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEET
General information:
TITO was launched using:
RESULT:
Template:
2PFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12015 for 377 contacts (-31.9/contact) +
2D Compatibility (PS) -8271 + (NN) 402 + (LL) 3600
1D Compatibility (HY) -6800 + (ID) 1250
Total energy: -24334.0 ( -64.55 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_2PFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PFU-query.scw
PDB file :
Tito_Scwrl_2PFU.pdb
: