Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVVAKKSLGQHFLMDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDSNLCEKMRARLRAEKKPFQLELVEKDALFLKEEE---PYFLISNLPYYIATRLVLNALKDPKCRGLLVMTQKEVALKFCAKDSQNALSVLAHTIGN---ATLLFDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNNLKKSVSYKEKLDKVLDFLALENQPTSVRASEVK-DYLKLLKSVLKG
3FUU Chain:A ((21-268))
---ADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLE-AGAEVTAIEKDL--RLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLLKTGRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTPT-------GALDDPGLFR------------LVEAAFGKRRKTLLNALAAAGYPKARVEEALRALGL---PPRVRAEELDLEAFRRLREGLE-
General information:
TITO was launched using:
RESULT:
Template:
3FUU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153210 for 1924 contacts (-79.6/contact) +
2D Compatibility (PS) -25921 + (NN) -15591 + (LL) 2516
1D Compatibility (HY) -20000 + (ID) 4550
Total energy: -216756.0 ( -112.66 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3FUU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FUU-query.scw
PDB file :
Tito_Scwrl_3FUU.pdb
: