Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALC-QGFALVFVPR----SDCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
1NZ0 Chain:A ((47-117))
--------------------------------------------------------------------------LGIVVKRKFGKATRRNKLKRWVREIFRRNKGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLNLLKRIEG--------------------
General information:
TITO was launched using:
RESULT:
Template:
1NZ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45555 for 355 contacts (-128.3/contact) +
2D Compatibility (PS) -7304 + (NN) -4228 + (LL) 4568
1D Compatibility (HY) -8800 + (ID) 1150
Total energy: -62469.0 ( -175.97 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1NZ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NZ0-query.scw
PDB file :
Tito_Scwrl_1NZ0.pdb
: