Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MHTVLQIGAGGVGSVVAHKMGMNRDVFKNIILASRSLDKCHAIKESMLKKGLGEIGVEQVDADDTQALIALIQKHKPKVVVNVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDKAYKEAGILGVLGAGFDPGVTNAYVAHAQRHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNVKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPESLAKDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSVEHFKAGVFNVEELNTDPFMEELIKQGLPYEVIER |
4INA Chain:A ((4-394)) | ---VLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLNIALPYQDLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFDPGVTNVFCAYAQKHYFDEIHEIDILDCNAGDHGYPFATNFNPEINLREVSSKGRYWENGEWIETEPMEIMQVWDYPEVGPKDSYLLYHEELESLVRNIKGLKRIRFFMTFGQSYLTHMRCLENVGMLRIDEIEVNGCKVVPIQVLKALLPDPASLASRTKGKTNIGCYIKGIKEGKARTIYIYNVCDHESCYREVNAQAISYTTGVPAMIGAKLMLEGKWS----GKGVFNMEELDPDPFMDELNKQGLPWEVKEM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4INA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 39628 for 3119 contacts (12.7/contact) +
2D Compatibility (PS) -37094 + (NN) 13710 + (LL) 776
1D Compatibility (HY) 17200 + (ID) 2150
Total energy: 32070.0 ( 10.28 by residue)
QMean score : 0.026
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