Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAPSLLSADFMHLAKEIESV--SNADFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEKHPH--RVLQLIKSSGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFESKDRKLAIEGLQNVRQPLA
1TQJ Chain:A ((7-223))
--VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP--
General information:
TITO was launched using:
RESULT:
Template:
1TQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172978 for 1766 contacts (-97.9/contact) +
2D Compatibility (PS) -22887 + (NN) -13472 + (LL) 208
1D Compatibility (HY) -19200 + (ID) 4350
Total energy: -232679.0 ( -131.75 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1TQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQJ-query.scw
PDB file :
Tito_Scwrl_1TQJ.pdb
: