Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQELYDKHIHDQSERRFILELDGQMVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSATKLAMKYAFHVLNMHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRMCIFQHQYREMDI
4R9M Chain:A ((30-193))
---SVKLRPLEREDLRYVHQLD---SVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFSVEGELMHEFFINGQYRNAIRMCIFQHQY-----
General information:
TITO was launched using:
RESULT:
Template:
4R9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106758 for 1109 contacts (-96.3/contact) +
2D Compatibility (PS) -17127 + (NN) -4969 + (LL) 536
1D Compatibility (HY) -23200 + (ID) 5650
Total energy: -157168.0 ( -141.72 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_4R9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R9M-query.scw
PDB file :
Tito_Scwrl_4R9M.pdb
: