Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATYFVMRKAGSNAGHPPAEMFELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSIITLILGAGFVGFELYEFAHYVTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN
1FFT Chain:C ((19-202))
---------------HDAGGTKIFGFWIYLMSDCILFSILFATYAVLVN-GTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMG---
General information:
TITO was launched using:
RESULT:
Template:
1FFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153237 for 1263 contacts (-121.3/contact) +
2D Compatibility (PS) -18646 + (NN) -1793 + (LL) 1536
1D Compatibility (HY) -27200 + (ID) 4200
Total energy: -203540.0 ( -161.16 by residue)
QMean score : 0.281
(partial model without unconserved sides chains):
PDB file :
Tito_1FFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FFT-query.scw
PDB file :
Tito_Scwrl_1FFT.pdb
: