Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPKYAIIINDIKRLISDGTFKPGEKIYSEDELKKKYNVSNTTVVRALHELVRAGILARYQGKGTYVSKSIINEEV-IFNEYTTVPNGRFNRKTKITNEHTKVVAINEIQDA-RIAKKLQIPPENMIVHFQRIRLIDDLPWTVQNNYMAKSNLINVDLTNFEKFNSLSEVIKELYGINILHEAMKERIEVEFPVKDKNNFKLLEIDTELPLYHIERITYVPEGQPYEYIESYLRHNFYSIEIEKKKQ
4U0V Chain:A ((13-237))
---PIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTE------DMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQ--SSIYDHIERYNSIPI----SRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYT--------
General information:
TITO was launched using:
RESULT:
Template:
4U0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79535 for 1628 contacts (-48.9/contact) +
2D Compatibility (PS) -23761 + (NN) -6161 + (LL) 2080
1D Compatibility (HY) -12800 + (ID) 2800
Total energy: -122977.0 ( -75.54 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_4U0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U0V-query.scw
PDB file :
Tito_Scwrl_4U0V.pdb
: