Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDYIIAAHGRYAQEVKDSCQMITGQTTNISAIT--FTEEMGVTDVLDAYMAVYSPVNETAIIVDIVGGTPCNAAQMFSTKHPEVKVVSGLSLGLIIPLSLGES-------LEEAMLGAKDNIQFVEQKASHTIVSDDGEEED
3MTQ Chain:A ((5-128))
--YIFASHGSFANGLLNSVELILGKQPDIHTLCAYVEEEVDLTQQVEALVARFPAQDELIVITDIFAGSVNNEFVRFLSR-PHFHLLSGLNLPLIIDLLISAAEDNTEKLITEALTNAKESIQYCNQ---------------
General information:
TITO was launched using:
RESULT:
Template:
3MTQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89957 for 777 contacts (-115.8/contact) +
2D Compatibility (PS) -12335 + (NN) -1618 + (LL) 700
1D Compatibility (HY) -12000 + (ID) 1900
Total energy: -117110.0 ( -150.72 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_3MTQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MTQ-query.scw
PDB file :
Tito_Scwrl_3MTQ.pdb
: