Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LEKYLICSDLDGTLLLKNQTISPKTLNLLQQLIEEGHHFAVSTGRMYNSATDFAKLVH---PKADVIASNGGVV--AVSGEIIQQEKMKQSALLETFLLCQNHDLPVFFFSTD-TVFYTKNPPY-YFTDEEDKGRVNATKLVAIKSREIFLEHADQFINGIVIEEEDFDKLAVLRSDLEKLSDVSILSSHANNIEILPKDMDKKYAVKNLAAHLNIKPENVITFGDGENDIGMLEVAGAGVAMENASELVKKSADFVTTANDADGIYYFLKKHLNR |
| 1RKQ Chain:A ((7-270)) | ----LIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDY--RFLEKLSREVGSHFHALDRTTLYTANRDISYYTVHES--FVATIPLVFCEAEK--MDPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIEKYV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87586 for 2231 contacts (-39.3/contact) +
2D Compatibility (PS) -27668 + (NN) -12918 + (LL) 964
1D Compatibility (HY) -18000 + (ID) 4550
Total energy: -149758.0 ( -67.13 by residue)
QMean score : 0.387
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