Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFYEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAECFVSTTTFLRFVRKLGFTGYSEFTTVLKFTLLGHTELKPSPFVVEQSDYREEYLKNIIESV----RVLEPSKIKKITKKLVNKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYRQAVLPHIGKDDLVFILTYGGHDIELIQTAQKLKSRNETPMLISITGADNNIIQNMSDINLYIFTDEIEMNNLDITSRISTIAIMELILYQFMEDETSSF
4IVN Chain:A ((23-256))
------------------RVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYKGYSDFRMALAVD-LSQT-----------GDICDVSAQSAVDSLQDTAKLIDRKSLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFAVSSSGSTKEVIHAA-GLAYKRDIP-VVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASKVGALLLVDVLVNSLLE------
General information:
TITO was launched using:
RESULT:
Template:
4IVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142455 for 1842 contacts (-77.3/contact) +
2D Compatibility (PS) -24221 + (NN) -11554 + (LL) 2820
1D Compatibility (HY) -11600 + (ID) 2250
Total energy: -189260.0 ( -102.75 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4IVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IVN-query.scw
PDB file :
Tito_Scwrl_4IVN.pdb
: