Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSNFTAKVPLSERMADVLISKDRWKDDEEGYLKVKYGLEIILINVMKFALVYGIALVTGLLLQTVTVHLSYLWLRRYSFGLHATKTLNCTLISLLMFVLAPFVFQ-NIPSNNWIVLGTF-GF-ILLNMFL----FAPADTESLPLIGEEHRKTLKRKAMIGTLILTGIALLIPFAEMKTLIMVGSLFQVISINPLTYKLLKRRYRNYEKYE
4PB1 Chain:A ((304-382))
---------------------------------------------------------------------------------------------LLGWLFAPLAFLIGVPWNEATVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFALCGFANLSSIAILL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PB1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46178 for 438 contacts (-105.4/contact) +
2D Compatibility (PS) -7180 + (NN) -458 + (LL) 11728
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -49038.0 ( -111.96 by residue)
QMean score : 0.195
(partial model without unconserved sides chains):
PDB file :
Tito_4PB1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PB1-query.scw
PDB file :
Tito_Scwrl_4PB1.pdb
: