Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGNVKIDAAKVAEAKKSAAIVEKSLESTHKKCKSVISYVEGASWSGKSRDAFLTFMELIEKYHADVKKNYKKQKKALTALEDYVEDFENTSYSKDVKRL
2YCB Chain:A ((103-182))
----------IIEARKPGLVIGKYGSTSRE-------IVKNTGWAPKILRTPPISSEIIERIRRTLRKNSKERKKILQQLGNRIH--QKPKYDNDWARL
General information:
TITO was launched using:
RESULT:
Template:
2YCB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5814 for 349 contacts (16.7/contact) +
2D Compatibility (PS) -8272 + (NN) -1027 + (LL) 1272
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -6863.0 ( -19.66 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_2YCB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YCB-query.scw
PDB file :
Tito_Scwrl_2YCB.pdb
: