Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKKNLEQIYAIEFTMGLRYRPMQIRHNIKLIFLLLLFVTWLQGDFMNRLPGNLDITKVDMPLVLLALLCYIILYPQKMTIRFQNLQYLLYICCFQFLVFMVIRYFYSNLIYGIQNMVSLTAQTLVASYVFLLVLWILALIFFYFHFRKKLRNGDYRKDSELQKKRSNLGLKLSKGSYILIGAFFVFILSSQIVGGIMVDIMIISIEIVGIALCSMGIVIFPEQLFTAYCKFKFKEFHIEE |
2LYC Chain:A ((10-33)) | --ITDEEFKTIPKYQLGRLTLEMMNE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2LYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -2764 for 109 contacts (-25.4/contact) +
2D Compatibility (PS) -2431 + (NN) 581 + (LL) 21448
1D Compatibility (HY) 800 + (ID) 150
Total energy: 17484.0 ( 160.40 by residue)
QMean score : 0.131
|
|
|